Defaults

taxotagger.defaults ¶

This module contains the default values for this TaxoTagger library.

DEFAULT_CACHE_DIR = '~/.cache/mycoai'

The default directory for storing downloads and cache files.

This is a constant and should not be modified.

ENV_MYCOAI_HOME = 'MYCOAI_HOME'

The environment variable name to set the working directory for the project.

If it is not set, the default directory DEFAULT_CACHE_DIR will be used.

On Linux or macOS, you can set the environment variable as follows:

export MYCOAI_HOME="~/mycoai"

Or in python, you can set it as follows:

import os
os.environ["MYCOAI_HOME"] = "~/mycoai"

PRETRAINED_MODELS = {
    "MycoAI-CNN": "https://zenodo.org/records/10904344/files/MycoAI-CNN.pt"
}

Pretrained models and their download URLs.

TAXONOMY_LEVELS = [
    "phylum",
    "class",
    "order",
    "family",
    "genus",
    "species",
]

The list of taxonomy level names used in this package.

MAX_BATCH_SIZE_BYTES = 64 * 1024 * 1024

The maximum batch size in bytes for the Milvus database.

Milvus has a limit of 64MB for input and output per RPC operation, including insert, search, and query operations.

For more information, see the Milvus documentation.